ClusterMassTracesByPrecursor

Options

version

Version of the tool that generated this parameters file.

assign_unassigned_to_all

Assign unassigned MS2 fragments to all precursors (only for ms1_centrif)

min_pearson_correlation

Minimal pearson correlation score to match elution profiles to each other.

max_lag

Maximal lag (e.g. by how many spectra the peak may be shifted at most). This parameter will depend on your chromatographic setup but a number between 1 and 3 is usually sensible.

min_nr_ions

Minimal number of ions to report a spectrum.

max_rt_apex_difference

Maximal difference of the apex in retention time (in seconds). This is a hard parameter, all profiles further away will not be considered at all.

swath_lower

Swath lower isolation window

swath_upper

Swath upper isolation window

log

Name of log file (created only when specified)

debug

Sets the debug level

threads

Sets the number of threads allowed to be used by the TOPP tool

no_progress

Disables progress logging to command line

force

Overrides tool-specific checks

test

Enables the test mode (needed for internal use only)

Views

ClusterMassTracesByPrecursor Std Output

The text sent to standard out during the execution of ClusterMassTracesByPrecursor.

ClusterMassTracesByPrecursor Error Output

The text sent to standard error during the execution of ClusterMassTracesByPrecursor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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