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PRIDE Downloader

KNIME Repository Access Nodes (Preview) version 1.0.0.qualifier by Center for Integrative BioInformatics

The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. This node allows querying the projects in the repository and shows a list of results. For each project a list of associated files is shown. From this list files can be selected and downloaded via FTP.

Options

Query
The query to search for projects
List of projects
The projects that match the given query (30 per page)
Page
Which page of the results to show
List of files
The files associated with a selected project

Output Ports

Icon
URIs of the downloaded files in a temporary folder

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install de.NBI - CIBI Extension from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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