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PRIDE Downloader

KNIME Repository Access Nodes (Preview) version 1.0.0.qualifier by Center for Integrative BioInformatics

The PRIDE PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. This node allows querying the projects in the repository and shows a list of results. For each project a list of associated files is shown. From this list files can be selected and downloaded via FTP.

Options

Query: The query to search for projects
List of projects: The projects that match the given query (30 per page)
Page: Which page of the results to show
List of files: The files associated with a selected project

Output Ports

: URIs of the downloaded files in a temporary folder

Best Friends (Incoming)

~~Table Column to Variable~~ (100 %) Deprecated

Best Friends (Outgoing)

BARD Compounds (33 %)
PubChem Compounds (33 %)
URI to Port (33 %)

Installation

To use this node in KNIME, install de.NBI - CIBI Extension from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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