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BARD Projects

Retrieves information about BARD projects.

BARD, the BioAssay Research Database (https://bard.nih.gov/) is a public database and suite of tools developed to provide access to bioassay data produced by the NIH Molecular Libraries Program (MLP).

Options

Get all projects: Retrieves all available projects.
Get projects from PID column: Retrieves projects with PIDs contained in the selected column.

Note: The IDs shown on the website are CAP (Catalog of Assay Protocols) IDs and not the BARD IDs needed here.

Input Ports

: Table containing the PIDs.

Output Ports

: Table containing the project metadata.
: Table containing the project ID together with the conducted experiment IDs and the type of experiment.

Note: List columns can be turned into separate rows using the Ungroup node.

Popular Predecessors

Molecule Reader (to MAE)100 %

Popular Successors

BARD Compounds100 %

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Installation

To use this node in KNIME, install the extension de.NBI - CIBI Extension from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Center for Integrative BioInformatics

Plugin version: 1.0.1.qualifier

On NodePit since: 2022-12-06

Last update: 2024-04-20

KNIME versions: From v3.6 to v4.7

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