The PDB Reader node loads molecules from Protein Data Bank files (PDB), macromolecule Cryptographic Information Format (mmCIF), Macromolecular Transmission Format (mmTF) files or directly via the four-letter code (PDB ID) from RCSB for subsequent processing.
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- AutoDock Vina13 %
- Structure-based Pharmacophore Creator6 %
- Active-Site Ligand Extractor6 %
- AutoDock 46 %
- MD Pharmacophore Creator5 %
- 3D Viewer5 %
- PDB Writer4 %
- MMFF94 Minimizer4 %
- Ligand-based Pharmacophore Creator4 %
- OpenBabel4 %
- Pharmacophore/Molecule Alignment3 %
- Auto-Binner2 %
- Activity Profiling2 %
- GroupBy2 %
- Mol Writer2 %
- Mol2 Writer2 %
- PDB Property Extractor2 %
- Docking (FlexX)< 1 %
- SDF Writer< 1 %
- PDB Sequence Extractor< 1 %
- GPCRDB Protein similarity< 1 %
- Interactive Table (legacy)< 1 %
- SDF Extractor< 1 %
- PML/PMZ Pharmacophore Writer< 1 %
MarvinSpace< 1 %- Create Bit Vector< 1 %
- Row Splitter< 1 %
- Row Filter< 1 %
- ICon< 1 %
- IScreen< 1 %
- PDB Loader< 1 %
- RCSB PdbImporter< 1 %
- 3D RMSD< 1 %
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