SeeSAR Viewer

The Interactive SeeSAR Viewer lets you visually inspect protein-ligand complexes. You can browse through the poses and assess the complex with Hyde.
All entries of the sd file can be shown in the table. So you might want to use the "SDF Inserter" node to add more columns you want to see in the SeeSAR table.

SeeSAR has to be licensed separately, see http://www.biosolveit.de/SeeSAR/ for more details.

Options

Library column
The molecules provided in this column are shown in SeeSAR. If the input table contains more than one column with a compatible type, you can choose here which column should be taken. The molecules have to be in sdf or mol2 format with 3D coordinates.
Please note that the molecules have to be located within the Binding Site, otherwise they cannot be assessed with Hyde in SeeSAR.
Keep debug files and show the log after the run
This setting keeps all temporary files and opens an editor to show the output of SeeSAR. This setting is very helpful for debugging.

Input Ports

Icon
Library: Input table with a molecule column in sdf or mol2 format with 3D coordinates. Please note that the molecules have to be located within the Binding Site, otherwise they cannot be assessed with Hyde in SeeSAR.
Icon
PDB: Input table with a protein column in pdb format.
If a SeeSAR project is given, the protein will be ignored.
Icon
SeeSAR Project - defined e.g. by the "Assess Affinity with Hyde in SeeSAR" node.
Protein will be ignored, if project is given.

Output Ports

This node has no output ports

Popular Predecessors

Popular Successors

  • No recommendations found

Views

This node has no views

Workflows

  • No workflows found

Links

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.