OpenSwathRewriteToFeatureXML 

Combines featureXML and mProphet tsv to FDR filtered featureXML.

Polygon Properties Streamable

Computes various properties for polygons.

Element Filter 

Filters molecules by element type occurrence.

RDKit Structure Normalizer 

Checks structures and tries to normalize them, if necessary.

RDKit Two Component Reaction Deprecated

Applies a reaction to two RDKit Mol columns

Formula Creator 

Enter primary and secondary model formulas

PhosphoScoring 

Scores potential phosphorylation sites in order to localize the most probable sites.

QCFeatureReader 

Reads QC feature information from a CSV file generated with the QCExporter.

OpenPepXL 

Protein-protein cross-linking identification using labeled linkers.