IonMobilityBinning 

Splits an mzML file with IonMobility frames into multiple mzML files by binning(merging) spectra by their IM values

ProteinInference 

Protein inference based on an aggregation of the scores of the identified peptides.

RDKit To InChI Streamable

Converts RDKit molecules into InChI Codes and optionally also into InChI Keys.

RDKit Open 3D Alignment 

Aligns the 3D model of two structures based on their shape and three-dimensional conformation.

TAB SSH 

run SSH with stdin and out

Decharger 

Decharges and merges different feature charge variants of the same peptide.

FSK Metadata Editor Deprecated

Edit the metadata in an FSK object

Data Creator 

Define a new data set with organism, matrix, assay conditions and references

FSK Joiner Deprecated

Joiner of FSK objects