OpenSwathConfidenceScoring

Compute confidence scores for OpenSwath results

Options

version: Version of the tool that generated this parameters file.
decoys: Number of decoy assays to select from the library for every true assay (0 for "all")
transitions: Number of transitions per feature to consider (highest intensities first; 0 for "all")
log: Name of log file (created only when specified)
debug: Sets the debug level
threads: Sets the number of threads allowed to be used by the TOPP tool
no_progress: Disables progress logging to command line
force: Overrides tool-specific checks
test: Enables the test mode (needed for internal use only)
intercept: Intercept term
delta_rt: Coefficient of retention time difference
dist_int: Coefficient of intensity distance

OpenSwathConfidenceScoring Std Output: The text sent to standard out during the execution of OpenSwathConfidenceScoring.
OpenSwathConfidenceScoring Error Output: The text sent to standard error during the execution of OpenSwathConfidenceScoring. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.4

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team

Plugin version: 3.2.0.202411141610

On NodePit since: 2024-12-06

Last update: 2024-12-17

KNIME versions: v5.4, v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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