Icon

MSstatsTMT

Post processing workflow for MSstatsTMT.
Requires output from MSstatsConverter output.

As an example input, an intermediate result from the workflow:
"Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT"
can be used (box H). The analysis steps in this workflow are also included in that workflow.

URL: Home of the OpenMS plugin https://www.openms.de/

MSstatsTMT analysis via R scripts MSstats post-processing for TMTPost processing workflow for using MSstatsTMT.Requires output from MSstatsConverter output from e.g. the workflow"Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT".This analysis is also included in that workflow. Load requiredpackagesActual statistical analysiswith Volcano Plot.Play around with contrasts here.Input: MSstatsTMT_plot_output_directoryNode 256Input: MSstatsConverter OutputR Source(Workspace) R View (Workspace) StringConfiguration Merge Variables Explorer Browser MSstatsTMT analysis via R scripts MSstats post-processing for TMTPost processing workflow for using MSstatsTMT.Requires output from MSstatsConverter output from e.g. the workflow"Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT".This analysis is also included in that workflow. Load requiredpackagesActual statistical analysiswith Volcano Plot.Play around with contrasts here.Input: MSstatsTMT_plot_output_directoryNode 256Input: MSstatsConverter OutputR Source(Workspace) R View (Workspace) StringConfiguration Merge Variables Explorer Browser

Nodes

Extensions

Links