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Worm images_​final_​with workaround_​CNN_​segmentation_​loop

Take fluo max projections from here TODO- measure mean intensity and SEM(n=width)- plot intensity+-SEM vs frame Node 84Node 85Node 86Node 87Node 88Node 89Node 91Node 112Node 125Node 126Node 127Split by channelMax projectover ZNode 168Node 169Node 170Node 176Node 177Node 178Node 180Node 183Node 185Node 186Node 187Node 190Node 191Node 192Node 194Node 195Node 196Node 197Node 208Node 209Node 210Node 211Node 212Node 213Node 214Node 215Node 216Node 217Node 218Node 219Optionally filtersome positionsor time pointNode 221Node 225Node 226Node 227Node 228Node 229Node 230Node 232Node 235Node 248End ofgroup loopNode 259Node 260Node 261Node 262Node 267Node 268Node 269Node 270Node 271Node 272Node 273Node 274Node 275Node 276Node 279Node 280Node 281Node 282Node 283Node 284Node 285Node 304Node 306Node 312Node 323Node 325Node 326Node 327Select folder with CNN segmented tiff imagesNode 358Node 359Node 361Node 362Node 363Node 364Node 365Node 368Node 369 Select nd dataset Filter subset GroupBy String Manipulation String to URI String Manipulation String to URI Copy/Move Files Copy/Move Files Split andfilter z slices Image Viewer Global Thresholder Connected ComponentAnalysis Labeling Filter Row Splitter GroupBy Joiner Joiner Straighten Image Projector Dimension Cleaner Row Splitter Concatenate Dimension Extender Image Cropper FeatureCalculator (BETA) InteractiveTable (local) Image Properties Split CollectionColumn String Manipulation Chunk Loop Start Table Row to Variable(deprecated) Loop End Joiner Joiner Flip horizontally(workaround) Image Properties Split CollectionColumn Column Rename Joiner GroupBy Joiner Math Formula Set Image Metadata GroupBy Image Viewer Row Filter Row Filter FeatureCalculator (BETA) Group Loop Start Sorter Row Filter Loop End GroupBy RowID RowID Group Loop Start Loop End Read stk filesand crop Empty Table Switch End IF Image Writer String Manipulation Image Cropper String Manipulation Math Formula Table Creator Cross Joiner Math Formula Chunk Loop Start Table Row to Variable(deprecated) Loop End Image Generator Loop End Table Row ToVariable Loop Start Double To Int Joiner RowID ConstantValue Column FeatureCalculator (BETA) Table Writer Don't Save Start Table Reader Image Viewer Column Splitter CSV Writer Table Writer List Files Math Formula Read Image (IJ1) Image Viewer Cell Splitter String Manipulation Cell Splitter Column Rename Dimension Cleaner Image Viewer Take fluo max projections from here TODO- measure mean intensity and SEM(n=width)- plot intensity+-SEM vs frame Node 84Node 85Node 86Node 87Node 88Node 89Node 91Node 112Node 125Node 126Node 127Split by channelMax projectover ZNode 168Node 169Node 170Node 176Node 177Node 178Node 180Node 183Node 185Node 186Node 187Node 190Node 191Node 192Node 194Node 195Node 196Node 197Node 208Node 209Node 210Node 211Node 212Node 213Node 214Node 215Node 216Node 217Node 218Node 219Optionally filtersome positionsor time pointNode 221Node 225Node 226Node 227Node 228Node 229Node 230Node 232Node 235Node 248End ofgroup loopNode 259Node 260Node 261Node 262Node 267Node 268Node 269Node 270Node 271Node 272Node 273Node 274Node 275Node 276Node 279Node 280Node 281Node 282Node 283Node 284Node 285Node 304Node 306Node 312Node 323Node 325Node 326Node 327Select folder with CNN segmented tiff imagesNode 358Node 359Node 361Node 362Node 363Node 364Node 365Node 368Node 369Select nd dataset Filter subset GroupBy String Manipulation String to URI String Manipulation String to URI Copy/Move Files Copy/Move Files Split andfilter z slices Image Viewer Global Thresholder Connected ComponentAnalysis Labeling Filter Row Splitter GroupBy Joiner Joiner Straighten Image Projector Dimension Cleaner Row Splitter Concatenate Dimension Extender Image Cropper FeatureCalculator (BETA) InteractiveTable (local) Image Properties Split CollectionColumn String Manipulation Chunk Loop Start Table Row to Variable(deprecated) Loop End Joiner Joiner Flip horizontally(workaround) Image Properties Split CollectionColumn Column Rename Joiner GroupBy Joiner Math Formula Set Image Metadata GroupBy Image Viewer Row Filter Row Filter FeatureCalculator (BETA) Group Loop Start Sorter Row Filter Loop End GroupBy RowID RowID Group Loop Start Loop End Read stk filesand crop Empty Table Switch End IF Image Writer String Manipulation Image Cropper String Manipulation Math Formula Table Creator Cross Joiner Math Formula Chunk Loop Start Table Row to Variable(deprecated) Loop End Image Generator Loop End Table Row ToVariable Loop Start Double To Int Joiner RowID ConstantValue Column FeatureCalculator (BETA) Table Writer Don't Save Start Table Reader Image Viewer Column Splitter CSV Writer Table Writer List Files Math Formula Read Image (IJ1) Image Viewer Cell Splitter String Manipulation Cell Splitter Column Rename Dimension Cleaner Image Viewer

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Created by: yannickhauser
Created at: 2016-11-07
On NodePit since: 2020-04-03
Last update: 2024-04-24
Created with KNIME version: v4.1.2
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