07_Gene_Expression_Analysis
Gene Expression Analysis
In this workflow, we analyze RNA-Seq data from tumors and matched normal tissue from three patients with oral squamous cell carcinomas (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0009317). Differentially expressed genes are discovered using the R package edgeR and are then displayed in an interactive view. Subsequently, genes are hierarchically clustered based on their expression pattern, and the results are shown via a dendrogram alongside a heatmap. We then perform a pathway enrichment analysis and look for compounds targeting the gene product of interest.
URL: Analzying Gene Expression Data with KNIME https://www.knime.com/blog/analyzing-gene-expression-data-with-knime
Nodes
Extensions
- FeatureKNIME Base Chemistry Types & Nodes
- FeatureKNIME Base nodes
- FeatureKNIME BigQuery
- FeatureKNIME Column Expressions (Labs)
- FeatureKNIME Database
- Show all 19 modules
Links
- No links available