FASTA Reader

This component reads DNA/RNA/Protein sequence files from a FASTA format file. The result is a three column table (ID, Sequence & SequenceLength), where individual sequence records are represented as rows.

You can read more about the FASTA file format at:
https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=BlastHelp

Options

FASTA File

Select a FASTA file to be read(.gz files are supported)

Nodes

• Breakpoint5 ×
• Extract Table Dimension3 ×
• Rule Engine Variable3 ×
• Table Column to Variable3 ×
• Duplicate Row Filter2 ×
• Column Appender1 ×
• Column Combiner1 ×
• Column Expressions1 ×
• Column Rename1 ×
• Column Splitter1 ×
• Component Input1 ×
• Component Output1 ×
• Histogram1 ×
• Java Edit Variable1 ×
• Local File Browser Configuration1 ×
• Merge Variables1 ×
• Missing Value1 ×
• Row Filter1 ×
• Row Splitter1 ×
• RowID1 ×
• Simple File Reader1 ×
• String Manipulation (Variable)1 ×
• Table Creator1 ×
• Table Row to Variable1 ×

Extensions

• FeatureKNIME Base nodes
• FeatureKNIME Column Expressions (Labs)
• FeatureKNIME JavaScript Views
• FeatureKNIME Javasnippet
• FeatureKNIME Quick Forms

Links

• No links available