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JSON Outputs Input Parameters Files from S3Presigned S3 URLs are not requied to contain the original filename. Hence, you will have to provide a mapping from asset hash to original filename if your workflow depends on the filename.This is often the case where multiple files form a group and the group association is denoted by the file name. Multiple images, for instance, might have been taken of the same specimen and they needto be processed together. Input Files Input Excel from BMGPresignedS3 URLsParse JSONDownload all imagesinto a temporary folderConvert collectioninto individual rowsFilename mappingUse filename mappingCompute targetlocation for downloadHACK: Plate IDnuclei-segmentationsegmentation-masks File Upload ContainerInput (JSON) JSON Path Download /Upload from List Ungroup Create Temp Dir String to URI ContainerInput (JSON) JSON Path Ungroup Cell Replacer Java Snippet Variable toTable Row Integer Input String Input ContainerOutput (JSON) Table to JSON Asset hash from URL Variable toTable Row JSON Outputs Input Parameters Files from S3Presigned S3 URLs are not requied to contain the original filename. Hence, you will have to provide a mapping from asset hash to original filename if your workflow depends on the filename.This is often the case where multiple files form a group and the group association is denoted by the file name. Multiple images, for instance, might have been taken of the same specimen and they needto be processed together. Input Files Input Excel from BMGPresignedS3 URLsParse JSONDownload all imagesinto a temporary folderConvert collectioninto individual rowsFilename mappingUse filename mappingCompute targetlocation for downloadHACK: Plate IDnuclei-segmentationsegmentation-masks File Upload ContainerInput (JSON) JSON Path Download /Upload from List Ungroup Create Temp Dir String to URI ContainerInput (JSON) JSON Path Ungroup Cell Replacer Java Snippet Variable toTable Row Integer Input String Input ContainerOutput (JSON) Table to JSON Asset hash from URL Variable toTable Row

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Created by: helfrich
Created at: 2021-03-17
On NodePit since: 2024-11-19
Last update: 2024-11-21
Created with KNIME version: v4.1.3

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