Icon

equilibrium-xc50-with-visualization

TODO Figure out when to apply the HACK and when tonot do thatTODO Make the ranges definable by flow variables in Function Fitting node TODO Make the visualization more flexible w.r.t. to the coloring offits and lines. Also, the points and fit lines should have the samecolour TODO Handle controls, ie. column 6 and 18 Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGDurations are notproperly supported byPlotlyHill equation HACK: x *= 10^6to improve fittingGenerate visualizationCompute final IC50 (see HACK)Rename columnsto x and yNormalize valuesNode 142Node 153Node 154Node 155Node 156Remove controlsNode 158Node 159Node 160Node 161Node 162Node 163Node 166Node 167Node 171Joiner File Upload File Upload Duration to Number Function Creator Function Fitting Math Formula Column Resorter GenericJavaScript View Massage datafor plotting Math Formula Column Rename Column Filter Math Formula RFU per sec RateData for Norm ContainerOutput (JSON) uM per sec RateData for Norm GroupBy Joiner Column Filter Column Rename Row Filter Group Loop Start Loop End GroupBy Split CollectionColumn Column Filter Joiner Extracted Data(product std) Compute limitsfor fitting Column Rename Table to JSON read-bmg-xlsx read-d300-xml Timer Info TODO Figure out when to apply the HACK and when tonot do thatTODO Make the ranges definable by flow variables in Function Fitting node TODO Make the visualization more flexible w.r.t. to the coloring offits and lines. Also, the points and fit lines should have the samecolour TODO Handle controls, ie. column 6 and 18 Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGDurations are notproperly supported byPlotlyHill equation HACK: x *= 10^6to improve fittingGenerate visualizationCompute final IC50 (see HACK)Rename columnsto x and yNormalize valuesNode 142Node 153Node 154Node 155Node 156Remove controlsNode 158Node 159Node 160Node 161Node 162Node 163Node 166Node 167Node 171Joiner File Upload File Upload Duration to Number Function Creator Function Fitting Math Formula Column Resorter GenericJavaScript View Massage datafor plotting Math Formula Column Rename Column Filter Math Formula RFU per sec RateData for Norm ContainerOutput (JSON) uM per sec RateData for Norm GroupBy Joiner Column Filter Column Rename Row Filter Group Loop Start Loop End GroupBy Split CollectionColumn Column Filter Joiner Extracted Data(product std) Compute limitsfor fitting Column Rename Table to JSON read-bmg-xlsx read-d300-xml Timer Info

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: helfrich
Created at: 2020-03-19
On NodePit since: 2024-11-19
Last update: 2024-12-21
Created with KNIME version: v4.1.2

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!