Icon

celltox-green-dynamic-backfill-detection

TODO We need to replacethe rounding with valueextraction from the D300 file Backfill detection Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGRename columnsto x and yRemove controlsRound concentrationsfit-inputsRemove duplicate columnsfitraw-inputsNode 324Remove wellsat edge of plateHACK: Plate IDFigure out if a rowcontains more thanone fluid (=backfilling)Top: No backfillBottom: BackfillDefine seriesNode 368Node 369Define seriesRemove DMSOfrom backfill based on 0 concentration(not name)Input XML from D300Top: Top seriesBottom: Bottom seriesDefine seriesDefine seriesJoiner File Upload File Upload Column Rename Row Filter read-bmg-xlsx-single-timepoint read-d300-xml Round Double Fit Hill with SE ContainerOutput (JSON) Table to JSON Column Filter ContainerOutput (JSON) Table to JSON ContainerOutput (JSON) Table to JSON GroupBy Column Rename GroupBy Column Rename Compute fold change Split Well column Rule-basedRow Filter Variable toTable Row Column Rename Cross Joiner Integer Input GroupBy Row Splitter ConstantValue Column ReferenceRow Filter ReferenceRow Filter ConstantValue Column Concatenate Rule-basedRow Filter Determine 0 values Massage controlcolumn File Upload Row Splitter ConstantValue Column ConstantValue Column Concatenate TODO We need to replacethe rounding with valueextraction from the D300 file Backfill detection Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGRename columnsto x and yRemove controlsRound concentrationsfit-inputsRemove duplicate columnsfitraw-inputsNode 324Remove wellsat edge of plateHACK: Plate IDFigure out if a rowcontains more thanone fluid (=backfilling)Top: No backfillBottom: BackfillDefine seriesNode 368Node 369Define seriesRemove DMSOfrom backfill based on 0 concentration(not name)Input XML from D300Top: Top seriesBottom: Bottom seriesDefine seriesDefine seriesJoiner File Upload File Upload Column Rename Row Filter read-bmg-xlsx-single-timepoint read-d300-xml Round Double Fit Hill with SE ContainerOutput (JSON) Table to JSON Column Filter ContainerOutput (JSON) Table to JSON ContainerOutput (JSON) Table to JSON GroupBy Column Rename GroupBy Column Rename Compute fold change Split Well column Rule-basedRow Filter Variable toTable Row Column Rename Cross Joiner Integer Input GroupBy Row Splitter ConstantValue Column ReferenceRow Filter ReferenceRow Filter ConstantValue Column Concatenate Rule-basedRow Filter Determine 0 values Massage controlcolumn File Upload Row Splitter ConstantValue Column ConstantValue Column Concatenate

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: helfrich
Created at: 2020-05-26
On NodePit since: 2024-11-19
Last update: 2024-12-21
Created with KNIME version: v4.1.3

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!