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helm2monomerservice_​get_​api_​v0.2

This workflow retrieves and displays in tabular form HELM chemical monomers from the HELM2MonomerService using a GET request to a Swagger API. Please note that this requires a local installation of the HELM Web Editor (instructions for installation using Docker and execution instructions can be found at: https://github.com/PistoiaHELM/pistoiahelm.github.com/tree/master/docker).

Notes on use:1. Install a local copy of the HELM Web Editor using Docker by following instructions at:https://github.com/PistoiaHELM/pistoiahelm.github.com/tree/master/docker2. Execute the HELM Web Editor and HELM2MonomerService from command line:cd /yourpath/pistoiahelm.github.com-master/dockerdocker container lsdocker run -d -p 8080:8080 helm[NOTE: Web Editor and HELM2MonomerService must be running for KNIME workflow to complete.]3. Execute the KNIME workflow; the API URL is directed to the local install of theHELM2MonomerService Retrieve monomersfromHELM2MonomerServiceconvert the mol stringto mol fileextract rowsas a list(don't forget to extract as a JSON type)Tabularize all JSONelements ANDnested elementsungroup the list:each monomersub-JSON as a rowmol to svgselectedcolumns GET Request Molecule Type Cast JSON Path JSON to Table Ungroup Renderer to Image Table View ofall monomers Column Filter Notes on use:1. Install a local copy of the HELM Web Editor using Docker by following instructions at:https://github.com/PistoiaHELM/pistoiahelm.github.com/tree/master/docker2. Execute the HELM Web Editor and HELM2MonomerService from command line:cd /yourpath/pistoiahelm.github.com-master/dockerdocker container lsdocker run -d -p 8080:8080 helm[NOTE: Web Editor and HELM2MonomerService must be running for KNIME workflow to complete.]3. Execute the KNIME workflow; the API URL is directed to the local install of theHELM2MonomerService Retrieve monomersfromHELM2MonomerServiceconvert the mol stringto mol fileextract rowsas a list(don't forget to extract as a JSON type)Tabularize all JSONelements ANDnested elementsungroup the list:each monomersub-JSON as a rowmol to svgselectedcolumns GET Request Molecule Type Cast JSON Path JSON to Table Ungroup Renderer to Image Table View ofall monomers Column Filter

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

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Created by: KLongo
Created at: 2019-10-21
On NodePit since: 2019-11-08
Last update: 2024-11-18
Created with KNIME version: v4.0.1
Tags: HELM

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