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Fragment_​SMILES_​replace_​multiple_​fragments

<p>This workflow reads in multiple fragment or molecular SMILES patterns then exhaustively replaces each character of each SMILES string with a column of alternative text ("atoms") strings to create a new molecule with a single change for each starting SMILES. The result is a small library of close analogs of the starting fragment or molecule similar to a generative design algorithm. No training is necessary and transformations range from simple atom replacements ("C" replaced by "N") to forming bicyclic systems to growing and shrinking ring sizes.</p>
Empty Table Creator
Remove Empty Rows
String Manipulation
File containing Atoms and SMILES
Excel Reader
Change Cl, Br to one letter representation
String Manipulation
Table Transposer
Atoms
Column Filter
get length of structure SMILES
String Manipulation
SMILES
Molecule Type Cast
All cores in single column
Loop End
Counting Loop Start
Cannonical
Column Filter
Table Row to Variable Loop Start
RDKit From Molecule
RDKit Canon SMILES
Change Cl, Br back from one letter representation
String Manipulation
SMILES
Column Filter
Column Filter
Loop End (Column Append)
Table Row to Variable Loop Start
SDF Writer (deprecated)
Duplicate Row Filter
Loop End
RDKit From Molecule

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