Icon

Using the align node

Aligning a 2 channel image through timeThis workflow takes a 2 channel time series image.The first align node aligns channel 2 relative to channel 1.The second align node registers both channels through time.Notes about usage: i) sometimes if the image is too small the node will fail. This has to do with the "crop mode" in the alignnode. Set it to "extend" and it will run but likely give an image that is badly alignedii) if align to first does not work in the align node "Align relative to", stepwise with an appropriate stepsize will usually work just fine.iii) if you want to check the images in Fiji you need to import the tiffs with Bioformat Importer. It will throwan error if you simply try to drag the tiffs into Fiji. Aligns channel 2relative to channel 1Aligns both channels throughtime Align image Align image Image Reader Image Writer Aligning a 2 channel image through timeThis workflow takes a 2 channel time series image.The first align node aligns channel 2 relative to channel 1.The second align node registers both channels through time.Notes about usage: i) sometimes if the image is too small the node will fail. This has to do with the "crop mode" in the alignnode. Set it to "extend" and it will run but likely give an image that is badly alignedii) if align to first does not work in the align node "Align relative to", stepwise with an appropriate stepsize will usually work just fine.iii) if you want to check the images in Fiji you need to import the tiffs with Bioformat Importer. It will throwan error if you simply try to drag the tiffs into Fiji. Aligns channel 2relative to channel 1Aligns both channels throughtime Align image Align image Image Reader Image Writer

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: andys
Created at: 2020-07-13
On NodePit since: 2020-07-14
Last update: 2024-11-21
Created with KNIME version: v4.2.0

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!