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05_​CellProfiler_​TrackObjects

CellProfiler TrackObjects

Run CellProfiler TrackObjects Example in KNIME.

General InformationPress the green double arrow above to run the complete workflow. You may have to scroll down to see allcontents of this tutorial.To see the contents of a meta node (grey nodes) you can Double-Click on it, which opens a new tab with thenodes contained in this meta node.Workflow Description:Run CellProfiler TrackObjects Example in KNIME.see: http://cellprofiler.com/examples.shtmlHints:Please set the path to your local CellProfiler installation at File > Preferences > KNIME > CellProfiler.You may want to increase your heap space as this processing flow needs a lot of memory.see: http://tech.knime.org/faq#q4_2 for detailsIf you need more information about other topics, maybe our tutorials. For details seehttp://tech.knime.org/community/image-processinghttp://tech.knime.org/community/cellprofilerIf you have any questions/problems please contact us via our forum:http://tech.knime.org/forum/knime-image-processing/Workflow Requirements:KNIME 3.0.0KNIME Image Processing 1.4.0KNIME CellProfiler Integration 0.2.0Workflow updated on 26/10/2015 Tracking ResultsCreates three sequencesView on ImagesLink to exampledata in workflow folderCellProfilerPipeline Executor CellProfilerMeasurements To Table Prepare InputSequences Image Viewer Table Creator General InformationPress the green double arrow above to run the complete workflow. You may have to scroll down to see allcontents of this tutorial.To see the contents of a meta node (grey nodes) you can Double-Click on it, which opens a new tab with thenodes contained in this meta node.Workflow Description:Run CellProfiler TrackObjects Example in KNIME.see: http://cellprofiler.com/examples.shtmlHints:Please set the path to your local CellProfiler installation at File > Preferences > KNIME > CellProfiler.You may want to increase your heap space as this processing flow needs a lot of memory.see: http://tech.knime.org/faq#q4_2 for detailsIf you need more information about other topics, maybe our tutorials. For details seehttp://tech.knime.org/community/image-processinghttp://tech.knime.org/community/cellprofilerIf you have any questions/problems please contact us via our forum:http://tech.knime.org/forum/knime-image-processing/Workflow Requirements:KNIME 3.0.0KNIME Image Processing 1.4.0KNIME CellProfiler Integration 0.2.0Workflow updated on 26/10/2015 Tracking ResultsCreates three sequencesView on ImagesLink to exampledata in workflow folderCellProfilerPipeline Executor CellProfilerMeasurements To Table Prepare InputSequences Image Viewer Table Creator

Nodes

Extensions

Links

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To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: dietzc
Created at: 2015-02-20
On NodePit since: 2019-07-12
Last update: 2024-04-22
Created with KNIME version: v3.1.3

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