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01_​ChEMBL_​REST_​Services

ChEBML_REST_Services

This workflow allows to connect to ChEMBL APi and extract the data from the latest version of ChEMBLdb.
It sends /data/lookup , /data/molecule , /data/target , and /data/assay calls to retrieve detailed information on the entries and their bioactivities.

The workflow is implemented using internal KNIME nodes, in particular GET Request Nodes.

Get IDs fromuser Call lookup web service and pickinteresting rows Call details web service ChEMBL_Rest_Services This workflow connects to ChEMBL API and extracts the data from the latest version of ChEMBLdb. It sends /data/lookup , /data/molecule , /data/target , and /data/assay calls to retrieve detailed information on the entries and their bioactivities.The workflow is implemented using internal KNIME nodes, in particular GET Request Nodes. Call bioactivity web service andexplore results Downloadresults Display Look Up Results Assay details call input chembl ids ChEMBL look up Download file ChEMBL Bioactivity View Bioactivities Moleculedetails call Target details call CASE SwitchData (Start) CASE SwitchData (End) Get IDs fromuser Call lookup web service and pickinteresting rows Call details web service ChEMBL_Rest_Services This workflow connects to ChEMBL API and extracts the data from the latest version of ChEMBLdb. It sends /data/lookup , /data/molecule , /data/target , and /data/assay calls to retrieve detailed information on the entries and their bioactivities.The workflow is implemented using internal KNIME nodes, in particular GET Request Nodes. Call bioactivity web service andexplore results Downloadresults Display Look Up Results Assay details call input chembl ids ChEMBL look up Download file ChEMBL Bioactivity View Bioactivities Moleculedetails call Target details call CASE SwitchData (Start) CASE SwitchData (End)

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: daria_knime
Created at: 2017-12-12
On NodePit since: 2019-07-12
Last update: 2024-04-24
Created with KNIME version: v3.5.0
Tags: REST REST Service JavaScript ChEMBL File Download

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