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Binding site 1

Workflow

SiteMap binding site characterization
Identify and characterize possible ligand binding sites (allosteric sites). Generate the ligand Interaction Diagrams. [Requires: SiteMap] The SiteMap node is used in more complex workflow examples: - Real work examples - SiteMap and docking - Real work examples - Binding site shape clustering
DockingSiteMap
SiteMap binding site characterization:Identify and characterize possible ligand binding sites (allosteric sites). Generate the ligand Interaction Diagrams.[Requires: SiteMap]The SiteMap node is used in more complex workflow examples:- Real work examples - SiteMap and docking- Real work examples - Binding site shape clusteringProtein-ligand complexes%GUIsetting%Protein and largest ligand Only the largest sites (> 100)Sitemap termsSite visualization%file%Get PDB Protein PreparationWizard Split complexes SiteMap Extract Properties Run Maestro Molecule Writer(from MAE) SiteMap binding site characterization:Identify and characterize possible ligand binding sites (allosteric sites). Generate the ligand Interaction Diagrams.[Requires: SiteMap]The SiteMap node is used in more complex workflow examples:- Real work examples - SiteMap and docking- Real work examples - Binding site shape clusteringProtein-ligand complexes%GUIsetting%Protein and largest ligand Only the largest sites (> 100)Sitemap termsSite visualization%file%Get PDB Protein PreparationWizard Split complexes SiteMap Extract Properties Run Maestro Molecule Writer(from MAE)

Download

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Nodes

Binding site 1 consists of the following 14 nodes(s):

Plugins

Binding site 1 contains nodes provided by the following 2 plugin(s):