Life Sciences
This directory contains 18 workflows.
3D Molecule Viewer
The component can be used to visualize molecular data using the JavaScript library 3Dmol.js (https://3dmol.csb.pitt.edu/index.html). The required input […]
Alphafold Database Search
This component is based on the AlphaFold Protein Structure Database (see: alphafold.ebi.ac.uk). The Alphafold AI system predicts a protein's 3D structure […]
ChEMBL Bioactivities
This component extracts bioactivities from the latest version of ChEMBLdb by connecting to ChEMBL API via REST. More information can be found here: ChEMBL […]
ChEMBL Details
This component extracts data from the latest version of ChEMBLdb by connecting to ChEMBL API via REST. Information about either compounds, assays or targets […]
ChEMBL Lookup
This component performs a ChEMBL ID lookup by connecting to ChEMBL API via REST. More information can be found here: ChEMBL webservices: […]
ChEMBL Structure Search
This component implements substructure and similarity searches through ChEMBLdb using its API. More information can be found here: ChEMBL webservices: […]
Convert Human Genome Assembly
This component converts the coordinates between different assembly versions of the human genome. This is done using an endpoint from Ensembl's REST API […]
Download FASTQ files from ENA
A component to download a set of FASTQ files under a certain project/study/experment by providing an accession ID from the European Nucleotide Archive […]
FASTA Reader
This component reads DNA/RNA/Protein sequence files from a FASTA format file. The result is a three column table (ID, Sequence & SequenceLength), where […]
Molecular Properties Filter
This component allows you to select a subset of molecules based on the input data and molecular properties calculated using the RDKit Descriptor Calculation […]