Node Connectivity

There are 4972 nodes that can be used as predessesor for a node with an input port of type Generic Port.

GATKSelectVariants 

Selects a subset of variants from a larger callset.

GATKUnifiedGenotyper 

Calls SNPs and indels.

GATKVariantFiltration 

Filters variant calls based on INFO and FORMAT annotations.

GenotypeGVCFs 

Performs joint genotyping on gVCF files produced by HaplotypeCaller.

MergeTwoVCFs 

This node merges two VCF files into one combined VCF file.

VCFMerger 

Combines VCF records from different sources.

VQSR 

Creates a Gaussian mixture model by looking at the annotations values over a high quality subset of the input call set and then evaluate all input variants.

DESeq 

This node uses the DESeq package to test for differential expression based on a model using the negative binomial distribution.

EdgeR 

Assessing differential expression in comparative RNA-seq experiments.

FeatureCountsMerger 

The FeatureCountsMerger can be used to merge the results of multiple feature count runs.