Table — NodePit

There are 4067 nodes that can be used as predessesor for a node with an input port of type

This node can detect differential expressed genes using the limma package.

bcftools — utilities for manipulating VCFs and BCFs.

Provides access to many functionalities of SAMtools.

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

This node can be used to merge statistics of the featureCounts node.

Tools to manipulate SAM/BAM files

Pindel - a pattern growth approach to detect breakpoints of large deletions and medium sized insertions from paired-end reads.

This node sorts the chromosomes of an input VCF file analogous to a given reference sequence.

This node filters annotated VCF files.

FastQC - Quality check for NGS read data.

Node Connectivity