Deprecated3D-e-Chem KNIME KripoDB nodes version 2.5.0.v201909251052 by Netherlands eScience Center
KRIPO stands for Key Representation of Interaction in POckets .
Find similar fragments bound to similar subpockets as the subpocket associated with the query fragment based on the fingerprint similarity matrix.
This node requires the kripodb Python package.
If the kripodb Python package was not installed then go to https://github.com/3D-e-Chem/kripodb#install and follow the installation instructions. To test if the package is installed run kripodb --version on the command line, it should print a version number if installed.
If the kripodb Python package was already installed then make sure that KNIME is using the same Python executable. In the File menu > Preferences > KNIME > Python make sure the path to the Python executable is the same Python which has the kripodb package installed. KNIME can use Python version 2 or 3, the node should have the Python version selected which has the Python package installed.
When combining this node with other Kripo nodes make sure the files are from the same dataset.
You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to firstname.lastname@example.org, follow @NodePit on Twitter, or chat on Gitter!
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.