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RoiPlotThumbnails

Generic Workflow Nodes for KNIME: SeqAn version 2.4.1.202004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Create PNG images with plot grids to OUT${i}.png from ROI records in IN.roi.

Web Documentation for RoiPlotThumbnails

Options

version-check
Turn this option off to disable version update notifications of the application.
verbose
Verbose mode.
vverbose
Very verbose mode.
max-rois
Maximal number of plots to create (0 for all).
max-value
Fix maximal y value. 0 for no limit..
num-cols
Number of plots in one row.
num-rows
Number of plots in one column.
plot-height
Height of one plot in px.
plot-width
Width of one plot in px.
border-width
Border width.
spacing
Space between plots.

Input Ports

Icon
ROI to plot. [roi,roi.bgzf,roi.gz]

Output Ports

Icon
Prefix of output file. []

Views

RoiPlotThumbnails Std Output
The text sent to standard out during the execution of RoiPlotThumbnails.
RoiPlotThumbnails Error Output
The text sent to standard error during the execution of RoiPlotThumbnails. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install SeqAn from the following update site:

KNIME 4.2
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Developers

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