Generic Workflow Nodes for KNIME: SeqAn version 188.8.131.52004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team
Compare the SAM/bam output MAPPING.sam/MAPPING.bam of any read mapper against the RABEMA gold standard previously built with rabema_build_gold_standard. The input is a reference FASTA file, a gold standard interval (GSI) file and the SAM/BAM input to evaluate.
The input SAM/BAM file must be sorted by queryname. The program will create a FASTA index file REF.fa.fai for fast random access to the reference.
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