This node is currently not available in KNIME v5.4 — instead we’re showing this page for KNIME v4.7. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.
Either simulate variation and write out the result to VCF and optionally FASTA files.
Options
Input Ports
- FASTA file with reference. [fasta,fa]
- TSV file with variants to simulate. See Section on the Variant TSV File below. [tsv,txt,opt.]
- VCF file to write simulated variations to. [vcf]
- FASTA file to write simulated haplotypes to. [fasta,fa,opt.]
- Path to load original methylation levels from. Methylation levels are simulated if omitted. [fq,fq.bgzf,fq.gz,fastq,fastq.bgzf,fastq.gz,fa,fa.bgzf,fa.gz,fasta,fasta.bgzf,fasta.gz,faa,faa.bgzf,faa.gz,ffn,ffn.bgzf,ffn.gz,fna,fna.bgzf,fna.gz,frn,frn.bgzf,frn.gz,embl,embl.bgzf,embl.gz,gbk,gbk.bgzf,gbk.gz,raw,raw.bgzf,raw.gz,sam,sam.bgzf,sam.gz,bam,opt.]
Output Ports
- TSV file to write breakpoints in variants to. [tsv,txt]
- Path to write methylation levels to as FASTA. Only written if -of/--out-fasta is given. [fq,fq.bgzf,fq.gz,fastq,fastq.bgzf,fastq.gz,fa,fa.bgzf,fa.gz,fasta,fasta.bgzf,fasta.gz,faa,faa.bgzf,faa.gz,ffn,ffn.bgzf,ffn.gz,fna,fna.bgzf,fna.gz,frn,frn.bgzf,frn.gz,raw,raw.bgzf,raw.gz,sam,sam.bgzf,sam.gz,bam]
Views
- MasonVariator Std Output
- The text sent to standard out during the execution of MasonVariator.
- MasonVariator Error Output
- The text sent to standard error during the execution of MasonVariator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)
Workflows
- No workflows found
Links
- No links available
Developers
You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.