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MasonMethylation

Generic Workflow Nodes for KNIME: SeqAn version 2.3.2.201707261654 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Simulate methylation levels for IN.fa and write them to OUT.fa.

Web Documentation for MasonMethylation

Options

version-check
Turn this option off to disable version update notifications of the application.
quiet
Low verbosity.
verbose
Higher verbosity.
very-verbose
Highest verbosity.
seed
Seed for RNG.
methylation-levels
Enable methylation level simulation.
meth-cg-mu
Median of beta distribution for methylation level of CpG loci.
meth-cg-sigma
Standard deviation of beta distribution for methylation level of CpG loci.
meth-chg-mu
Median of beta distribution for methylation level of CHG loci.
meth-chg-sigma
Standard deviation of beta distribution for methylation level of CHG loci.
meth-chh-mu
Median of beta distribution for methylation level of CHH loci.
meth-chh-sigma
Standard deviation of beta distribution for methylation level of CHH loci.

Input Ports

Input FASTA file with genome. [fa,fasta]
Input FASTA file with genome. [fa,fasta]

Views

MasonMethylation Std Output
The text sent to standard out during the execution of MasonMethylation.
MasonMethylation Error Output
The text sent to standard error during the execution of MasonMethylation. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: SeqAn from the following update site:

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