MasonGenome

Simulate a random genome to the output file. For each -l/--contig-length entry, a contig with the given length will be simulated.

Web Documentation for MasonGenome

Options

version-check
Turn this option off to disable version update notifications of the application.
quiet
Set verbosity to a minimum.
verbose
Enable verbose output.
very-verbose
Enable very verbose output.
contig-length
Length of the contig to simulate. Give one -l value for each contig to simulate.
seed
The seed to use for the random number generator.

Input Ports

This node has no input ports

Output Ports

Icon
Output file. [fq,fq.bgzf,fq.gz,fastq,fastq.bgzf,fastq.gz,fa,fa.bgzf,fa.gz,fasta,fasta.bgzf,fasta.gz,faa,faa.bgzf,faa.gz,ffn,ffn.bgzf,ffn.gz,fna,fna.bgzf,fna.gz,frn,frn.bgzf,frn.gz,raw,raw.bgzf,raw.gz,sam,sam.bgzf,sam.gz,bam]

Popular Predecessors

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Popular Successors

Views

MasonGenome Std Output
The text sent to standard out during the execution of MasonGenome.
MasonGenome Error Output
The text sent to standard error during the execution of MasonGenome. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Links

Developers

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Installation

To use this node in KNIME, install the extension SeqAn from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team
Plugin version: 2.4.1.202004061533
On NodePit since: 2022-12-06
Last update: 2024-12-23
KNIME versions: From v3.6 to v4.7

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