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MasaiOutputSe

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

Web Documentation for MasaiOutputSe

Options

no-gaps: Do not align reads with gaps.
matches: Maximum number of matches per read.
tmp-folder: Specify a huge temporary folder. Default: use the genome folder.
no-cigar: Do not output CIGAR string. This only affects SAM output.
no-dump: Do not dump results.

Input Ports

: [fasta,fa]
: [fastq,fasta,fa]
: [raw]

Output Ports

: Specify an output file. Default: use the reads filename prefix. [raw,sam]

Popular Predecessors

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Views

MasaiOutputSe Std Output: The text sent to standard out during the execution of MasaiOutputSe.
MasaiOutputSe Error Output: The text sent to standard error during the execution of MasaiOutputSe. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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Developers

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Installation

To use this node in KNIME, install the extension SeqAn from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Plugin version: 2.4.1.202004061533

On NodePit since: 2022-12-06

Last update: 2024-12-23

KNIME versions: From v3.6 to v4.7

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