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MasaiOutputPe

Generic Workflow Nodes for KNIME: SeqAn version 2.4.1.202004061533 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

Web Documentation for MasaiOutputPe

Options

no-gaps
Do not align reads with gaps.
library-length
Library length.
library-error
Library length tolerance.
tmp-folder
Specify a huge temporary folder. Default: use the genome folder.
no-cigar
Do not output CIGAR string. This only affects SAM output.
no-dump
Do not dump results.

Input Ports

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[fasta,fa]
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[fastq,fasta,fa]
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[fastq,fasta,fa]
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[raw]
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[raw]

Output Ports

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Specify an output file. Default: use the reads filename prefix. [raw,sam]

Views

MasaiOutputPe Std Output
The text sent to standard out during the execution of MasaiOutputPe.
MasaiOutputPe Error Output
The text sent to standard error during the execution of MasaiOutputPe. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install SeqAn from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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