MasaiOutputPe

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

Web Documentation for MasaiOutputPe

Options

no-gaps
Do not align reads with gaps.
library-length
Library length.
library-error
Library length tolerance.
tmp-folder
Specify a huge temporary folder. Default: use the genome folder.
no-cigar
Do not output CIGAR string. This only affects SAM output.
no-dump
Do not dump results.

Input Ports

Icon
[fasta,fa]
Icon
[fastq,fasta,fa]
Icon
[fastq,fasta,fa]
Icon
[raw]
Icon
[raw]

Output Ports

Icon
Specify an output file. Default: use the reads filename prefix. [raw,sam]

Popular Predecessors

  • No recommendations found

Popular Successors

  • No recommendations found

Views

MasaiOutputPe Std Output
The text sent to standard out during the execution of MasaiOutputPe.
MasaiOutputPe Error Output
The text sent to standard error during the execution of MasaiOutputPe. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

  • No workflows found

Further Links

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.