IconRNPxlXICFilter0 ×

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Remove MS2 spectra from treatment based on the fold change between control and treatment.

Web Documentation for RNPxlXICFilter

Options

version
Version of the tool that generated this parameters file.
fold_change
fold change between XICs
rt_tol
RT tolerance in [s] for finding max peak (whole RT range around RT middle)
mz_tol
m/z tolerance in [ppm] for finding a peak
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

input mzML file [mzML]
input mzML file [mzML]

Output Ports

output of the treatment file after XIC filtering. [mzML]

Views

RNPxlXICFilter Std Output
The text sent to standard out during the execution of RNPxlXICFilter.
RNPxlXICFilter Error Output
The text sent to standard error during the execution of RNPxlXICFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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