RNPxlXICFilter

Remove MS2 spectra from treatment based on the fold change between control and treatment.

Web Documentation for RNPxlXICFilter

Options

version
Version of the tool that generated this parameters file.
fold_change
fold change between XICs
rt_tol
RT tolerance in [s] for finding max peak (whole RT range around RT middle)
mz_tol
m/z tolerance in [ppm] for finding a peak
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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input mzML file [mzML]
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input mzML file [mzML]

Output Ports

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output of the treatment file after XIC filtering. [mzML]

Views

RNPxlXICFilter Std Output
The text sent to standard out during the execution of RNPxlXICFilter.
RNPxlXICFilter Error Output
The text sent to standard error during the execution of RNPxlXICFilter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Further Links

Developers

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