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RNADigestor

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Digests an RNA sequence database in-silico.

Web Documentation for RNADigestor

Options

version
Version of the tool that generated this parameters file.
missed_cleavages
The number of allowed missed cleavages
min_length
Minimum length of a fragment
max_length
Maximum length of a fragment
enzyme
Digestion enzyme (RNase)
unique
Report each unique sequence fragment only once
cdna
Input file contains cDNA sequences - replace 'T' with 'U')
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input file containing RNA sequences [fasta]

Output Ports

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Output file containing sequence fragments [fasta]

Views

RNADigestor Std Output
The text sent to standard out during the execution of RNADigestor.
RNADigestor Error Output
The text sent to standard error during the execution of RNADigestor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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