PeakPickerIM

Options

version

Version of the tool that generated this parameters file.

processOption

Whether to load all data and process them in-memory or process on-the-fly (lowmemory) without loading the whole file into memory first

method

Method to pick peaks in IM dimension

log

Name of log file (created only when specified)

debug

Sets the debug level

threads

Sets the number of threads allowed to be used by the TOPP tool

no_progress

Disables progress logging to command line

force

Overrides tool-specific checks

test

Enables the test mode (needed for internal use only)

sum_tolerance_mz

Tolerance for summing adjacent m/z peaks (ppm)

sum_tolerance_im

Tolerance for summing adjacent ion mobility peaks (1/k0)

gauss_ppm_tolerance

Gaussian smoothing m/z tolerance in ppm

sgolay_frame_length

Savitzky-Golay smoothing frame length

sgolay_polynomial_order

Savitzky-Golay smoothing polynomial order

ppm_tolerance_cluster

m/z tolerance in ppm for clustering

im_tolerance_cluster

Ion mobility tolerance in 1/k for clustering

ppm_tolerance_elution

Mass trace m/z tolerance in ppm

Views

PeakPickerIM Std Output

The text sent to standard out during the execution of PeakPickerIM.

PeakPickerIM Error Output

The text sent to standard error during the execution of PeakPickerIM. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

• No workflows found

Links

• No links available

Developers