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IDDecoyProbability

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Estimates peptide probabilities using a decoy search strategy.

WARNING: This util is deprecated.

Web Documentation for IDDecoyProbability

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)
number_of_bins
Number of bins used for the fitting, if sparse datasets are used, this number should be smaller
lower_score_better_default_value_if_zero
This value is used if e.g. a E-value score is 0 and cannot be transformed in a real number (log of E-value)

Input Ports

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Identification input of combined forward decoy search (reindex with PeptideIndexer first) [idXML,opt.]
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Identification input of forward run [idXML,opt.]
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Identification input of decoy run [idXML,opt.]

Output Ports

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Identification output with forward scores converted to probabilities [idXML]

Views

IDDecoyProbability Std Output
The text sent to standard out during the execution of IDDecoyProbability.
IDDecoyProbability Error Output
The text sent to standard error during the execution of IDDecoyProbability. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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