IconFeatureFinderMRM0 ×

Generic Workflow Nodes for KNIME: OpenMS version by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Detects two-dimensional features in LC-MS data.

Web Documentation for FeatureFinderMRM


Version of the tool that generated this parameters file.
Name of log file (created only when specified)
Sets the debug level
Sets the number of threads allowed to be used by the TOPP tool
Disables progress logging to command line
Overwrite tool specific checks.
Enables the test mode (needed for internal use only)
Minimal distance of MRM features in seconds.
Minimal number of peaks which are needed for a single feature
Minimal S/N ratio a peak must have to be taken into account. Set to zero if the MRM-traces contains mostly signals, and no noise.
If set to true, for each feature a plot will be created, in the subdirectory 'debug'
If set to true, each trace, which is in this case a part of the MRM monitoring trace with signal is resampled, using the minimal distance of two data points in RT dimension
If set to true, debug messages are written, the output can be somewhat lengthy.

Input Ports

input file [mzML]

Output Ports

output file [featureXML]


FeatureFinderMRM Std Output
The text sent to standard out during the execution of FeatureFinderMRM.
FeatureFinderMRM Error Output
The text sent to standard error during the execution of FeatureFinderMRM. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Outgoing)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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