FeatureFinderMRM

Options

version

Version of the tool that generated this parameters file.

log

Name of log file (created only when specified)

debug

Sets the debug level

threads

Sets the number of threads allowed to be used by the TOPP tool

no_progress

Disables progress logging to command line

force

Overrides tool-specific checks

test

Enables the test mode (needed for internal use only)

min_rt_distance

Minimal distance of MRM features in seconds.

min_num_peaks_per_feature

Minimal number of peaks which are needed for a single feature

min_signal_to_noise_ratio

Minimal S/N ratio a peak must have to be taken into account. Set to zero if the MRM-traces contains mostly signals, and no noise.

write_debug_files

If set to true, for each feature a plot will be created, in the subdirectory 'debug'

resample_traces

If set to true, each trace, which is in this case a part of the MRM monitoring trace with signal is resampled, using the minimal distance of two data points in RT dimension

write_debuginfo

If set to true, debug messages are written, the output can be somewhat lengthy.

Views

FeatureFinderMRM Std Output

The text sent to standard out during the execution of FeatureFinderMRM.

FeatureFinderMRM Error Output

The text sent to standard error during the execution of FeatureFinderMRM. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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