FFEval

Evaluation tool for feature detection algorithms.

Options

version: Version of the tool that generated this parameters file.
rt_tol: Allowed tolerance of RT relative to average feature RT span.
rt_tol_abs: Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero).
mz_tol: Allowed tolerance in m/z (is divided by charge).
log: Name of log file (created only when specified)
debug: Sets the debug level
threads: Sets the number of threads allowed to be used by the TOPP tool
no_progress: Disables progress logging to command line
force: Overrides tool-specific checks
test: Enables the test mode (needed for internal use only)

: Feature input file, which contains the data to be tested against the truth file. [featureXML]
: Truth feature file that defines what features should be found. [featureXML]
: Feature file containing seeds with abort reasons. [featureXML,opt.]

: Feature output file. If given, an annotated input file is written. [featureXML]
: If given, a ROC curve file is created (ROC points based on intensity threshold) [csv]

FFEval Std Output: The text sent to standard out during the execution of FFEval.
FFEval Error Output: The text sent to standard error during the execution of FFEval. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team

Plugin version: 3.0.0.202307112039

On NodePit since: 2023-12-06

Last update: 2024-04-25

KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.