FFEval

Evaluation tool for feature detection algorithms.

Web Documentation for FFEval

Options

version
Version of the tool that generated this parameters file.
rt_tol
Allowed tolerance of RT relative to average feature RT span.
rt_tol_abs
Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero).
mz_tol
Allowed tolerance in m/z (is divided by charge).
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Feature input file, which contains the data to be tested against the truth file. [featureXML]
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Truth feature file that defines what features should be found. [featureXML]
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Feature file containing seeds with abort reasons. [featureXML,opt.]

Output Ports

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Feature output file. If given, an annotated input file is written. [featureXML]
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If given, a ROC curve file is created (ROC points based on intensity threshold) [csv]

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Views

FFEval Std Output
The text sent to standard out during the execution of FFEval.
FFEval Error Output
The text sent to standard error during the execution of FFEval. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

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Further Links

Developers

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