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PMF Writer

Node extensions for KNIME Workbench version by BfR

This node writes models and data to a PMF file in disk. The generated PMF files support the following cases:

  • Experimental data
  • Primary model with data
  • Primary model without data
  • Two steps secondary model
  • One step secondary model
  • Manual secondary model
  • Two steps secondary model
  • One step secondary model
  • Manual secondary model


Output Path
Path where the PMF is written into.
Model Name
Specifies the name of the models in SBML and the filename. If you choose "Test" as model name, the models are named "Test_1", "Test_2", ...
Is secondary?
If checked the model is considered secondary. Otherwise it is considered tertiary
Overwrite, ok?
If checked an existing model with the same name will be overwritten
Split top level models?
If checked the top level models (secondary or tertiary models) will be saved into separated PMF files
Creator Given Name
Creator given name
Creator Family Name
Creator family name
Creator Contact
Creator contact
Created on
Last Modified
Date of last modification

Input Ports

Table with data or models


To use this node in KNIME, install PMM Nodes from the following update site:


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