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FSK Runner

DeprecatedDeprecatednodes version 1.0.0.202102171221

Runs an FSK model and returns it. The R workspace is also provided on a second port for compatibility with KNIME R nodes.

Model metadata

One row table with metadata of the model read from the file. Every column describes a different property.
Column name Data type
Model name String
Model id SId
Model link String
Organism SId
Organism details String
Environment SId
Environment details String
Model creator String
Model family name String
Model contact String
Model reference description String
Model reference description link String
Created date Date
Modified date Date
Rights String
Notes String
Curation status String
Model type String
Subject String
Food process String
Dependent variable SId
Dependent variable unit SId
Dependent variable type String
Dependent variable min Number
Dependent variable max Number
Independent variables SId (multiple values)
Independent variable units SId (multiple values)
Independent variable types String (multiple values)
Independent variable mins Number (multiple values)
Independent variable maxs Number (multiple values)
Independent variable values Number (multiple values)
Has data? String

Type SId

Some properties are taking unique identifiers of type SId. The SId type follows the pattern:

  • letter ::= ’a’..’z’,’A’..’Z’
  • digit ::= ’0’..’9’
  • nameChar ::= letter | digit | ’_’
  • name ::= ( letter | ’_’ ) nameChar*

Examples of valid SId: escherichia_coli10, _eColi.

Examples of invalid SId: 0escherichia_coli, , 0.

Properties with multiple values

Properties taking multiple values are encoded using the two characters || as splitter. For example two variable units grams and liters would be encoded as gram || liter. If a variable has no unit then a whitespace is used instead, e.g. gram || .

Related properties like the independent variables have the same number of values across the properties. Therefore, the independent variable names, units, minimum and maximum values must have the same number of values to describe N variables. If a value is missing like a variable without unit then a whitespace must be used instead.

Input Ports

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FSK object
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Model metadata

Output Ports

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FSK object
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R workspace
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View Image

Views

R View

Installation

To use this node in KNIME, install BfR FSK-Lab from the following update site:

KNIME 4.3

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Developers

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