Speedy Sequence Alignment Visualisation

The node generates an SVG rendering of pairs of aligned sequences.

This node was developed by Vernalis Research . For feedback and more information, please contact knime@vernalis.com

Options

First Sequence Column: The String column containing the first aligned sequence
Second Sequence Column: The String column containing the second aligned sequence
Space every n residues: The aligned sequences should have a space character inserted every 'n' residues. If this value is 0, no spaces are inserted
Residues per line: The number of residues to be included on a line of the view
Match Colour: The colour to be used for matching (i.e. identical in both sequences) residues
Mismatch Colour: The colour to be used for mismatching (i.e. different, non-gap residues ) residues
Gap Colour: The colour to be used for sequence gaps
Bold: Whether the corresponding residue type (match, mismatch, gap) should be emboldened in the depiction

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To use this node in KNIME, install the extension Vernalis KNIME Nodes from the below update site following our NodePit Product and Node Installation Guide:

v5.3

A zipped version of the software site can be downloaded here.

Plugin provider: Vernalis Research, UK

Plugin version: 1.36.7.v202405281205

On NodePit since: 2024-07-11

Last update: 2024-11-15

Tags: Streamable

KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5

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