Speedy Sequence Alignment Visualisation

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First Sequence Column

The String column containing the first aligned sequence

Second Sequence Column

The String column containing the second aligned sequence

Space every n residues

The aligned sequences should have a space character inserted every 'n' residues. If this value is 0, no spaces are inserted

Residues per line

The number of residues to be included on a line of the view

Match Colour

The colour to be used for matching (i.e. identical in both sequences) residues

Mismatch Colour

The colour to be used for mismatching (i.e. different, non-gap residues ) residues

Gap Colour

The colour to be used for sequence gaps

Bold

Whether the corresponding residue type (match, mismatch, gap) should be emboldened in the depiction

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