Alignment Reader

Read alignment files in FASTA and Maestro format. The input format is determined by the file extension. Note that alignments are converted to Maestro format by default.

Backend implementation

Options

Alignments file

Alignments file to be loaded
File can be an URL like:
knime://LOCAL/path/to/file - knime://LOCAL refers to the current workspace
knime://knime.workflow/path/to/file - knime://knime.workspace refers to the current workflow

Load all Alignments into one cell

Read Alignments into one table row/cell; the default is to store at most one Alignment per row

Import all Alignments

Whether the entire file should be loaded

Start

If not all Alignments are loaded, which number Alignment, should loader start at (disabled if Import all Alignments is set)

End

Should the file be loaded until to end (disabled if Import all Alignments is set)

Total

If not all Alignments are imported and not loaded until the end, how many total Alignments should be loaded (disabled if Import all Alignments or End is set)

Views

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Workflows

• Node Readers and WritersKNIME Hub
• Node Readers and WritersKNIME Hub
• Readers and WritersKNIME Hub
• Readers and WritersKNIME Hub

Links

• No links available

Developers