Proteax mol_render_info

Produces condensed or full-structure molecule rendering info for the supplied protein entry. If the input is an MDL molfile the molecule is rendered directly from the connection table without further conversion.

Options

Protein text or molfile

Protein entry in UniProt, PLN, GPMAW, FASTA, or MDL molfile format.

Structure format

'F'/'C' to generate Full/Condensed structure molecule (default is condensed), or 'M' to force Proteax to parse input as a V2000 molfile. 'n' to add a molecule name label (none displayed per default). 'l' to add residue and terminal name labels for expanded fragments (none displayed per default). 'a<integer>' to add absolute residue numbering or 'r<integer>' to add chain-relative residue numbering (labels are added for every <integer> residues). The 'F', 'C', 'l', 'a', and 'r' format controls are applicable to protein entry input only.

Result column name

Name of appended column with result.

Add error column

Adds a column with any error messages. The error column is always named like the output column plus " - error". If the error column is not added, all errors will be logged to the KNIME console instead.

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