Calculates the DerNot expression that will produce the given protein when applied to the reference protein.

Options

Protein text or molfile
Protein entry in UniProt, PLN, GPMAW, FASTA, or MDL molfile format.
Ref protein text or molfile
Reference protein entry in UniProt, PLN, GPMAW, FASTA, or MDL molfile format.
Diff format
DerNot formatting, 1-3 characters: '*' for anonymous expressions, 'L' to force chain locants, 'D' to display deleted residues in des- parts.
Result column name
Name of appended column with calculated result.
Add error column
Adds a column with any error messages. The error column is always named like the output column plus " - error". If the error column is not added, all errors will be logged to the KNIME console instead.

Input Ports

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Table with at least one column that has a protein entry or molfile.

Output Ports

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Table with an appended column containing the calculated result.

Workflows

Installation

To use this node in KNIME, install Biochemfusion Proteax KNIME node extension from the following update site:

KNIME 4.2

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Developers

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