PSMFeatureExtractor 

Computes extra features for each input PSM.

BeeF Reader 

Parses a specified BeeF file and creates a node, edge and feature table.

IDConflictResolver 

Resolves ambiguous annotations of features with peptide identifications

MapStatistics 

Extract extended statistics on the features of a map for quality control.

Decharger 

Decharges and merges different feature charge variants of the same peptide.

FeatureFinderCentroided 

Detects two-dimensional features in LC-MS data.

FeatureFinderIdentification 

Detects features in MS1 data based on peptide identifications.

FeatureFinderIsotopeWavelet 

Detects two-dimensional features in LC-MS data.

FeatureFinderMRM 

Detects two-dimensional features in LC-MS data.

FeatureFinderMetaboIdent 

Detects features in MS1 data based on metabolite identifications.