IDConflictResolver 

Resolves ambiguous annotations of features with peptide identifications

MapStatistics 

Extract extended statistics on the features of a map for quality control.

FeatureFinderMetaboIdent 

Detects features in MS1 data based on metabolite identifications.

FeatureFinderIdentification 

Detects features in MS1 data based on peptide identifications.

MetaProSIP 

Performs proteinSIP on peptide features for elemental flux analysis.

Decharger 

Decharges and merges different feature charge variants of the same peptide.

FeatureFinderCentroided 

Detects two-dimensional features in LC-MS data.

MetaboliteAdductDecharger 

Decharges and merges different feature charge variants of the same metabolite.

OrientationJ Measurement Streamable

Extracts the features energy, orientation and coherency from images.

OpenSwathAnalyzer 

Picks peaks and finds features in an SWATH-MS or SRM experiment.