DTAExtractor 

Extracts spectra of an MS run file to several files in DTA format.

ClusterMassTracesByPrecursor 

Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.

FeatureLinkerUnlabeledQT 

Groups corresponding features from multiple maps.

RDKit Generate Coords Streamable

Generates coordinates (2D or 3D) for an input RDKit Mol column

FSK Creator Deprecated

Creates an FSK object

PeptideIndexer 

Refreshes the protein references for all peptide hits.

IDMapper 

Assigns protein/peptide identifications to features or consensus features.

QCPrecursorReader 

Reads QC precursor summary from a CSV file generated with the QCExporter.

IDExtractor 

Extracts 'n' peptides randomly or best 'n' from idXML files.