Icon

cellqc

TODO We need to replacethe rounding with valueextraction from the D300 file Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGRename columnsto x and yRemove controlsRound concentrationsfit-inputsOnly include"No Backfill"fitraw-inputsNode 324HACK: Plate IDRemove wellsat edge of plateFluid nameFluidDispensedconcentrationConcentrationunitTop: backgroundBottom: restTop: 0uM controlBottom: dose responsesSubtractbackgroundDefine backfill /no backfillJoiner File Upload File Upload Column Rename Row Filter read-bmg-xlsx-single-timepoint read-d300-xml Round Double Fit Hill with SE ContainerOutput (JSON) Table to JSON Row Filter ContainerOutput (JSON) Table to JSON ContainerOutput (JSON) Table to JSON GroupBy Column Rename GroupBy Column Rename Compute fold change Variable toTable Row Column Rename Cross Joiner Integer Input Split Well column Rule-basedRow Filter Rule Engine Rule Engine Rule Engine Rule Engine Row Splitter Row Splitter Concatenate Math Formula Rule Engine extract-fluids-from-d300-xml Table Rowto Variable Compute background TODO We need to replacethe rounding with valueextraction from the D300 file Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGRename columnsto x and yRemove controlsRound concentrationsfit-inputsOnly include"No Backfill"fitraw-inputsNode 324HACK: Plate IDRemove wellsat edge of plateFluid nameFluidDispensedconcentrationConcentrationunitTop: backgroundBottom: restTop: 0uM controlBottom: dose responsesSubtractbackgroundDefine backfill /no backfillJoiner File Upload File Upload Column Rename Row Filter read-bmg-xlsx-single-timepoint read-d300-xml Round Double Fit Hill with SE ContainerOutput (JSON) Table to JSON Row Filter ContainerOutput (JSON) Table to JSON ContainerOutput (JSON) Table to JSON GroupBy Column Rename GroupBy Column Rename Compute fold change Variable toTable Row Column Rename Cross Joiner Integer Input Split Well column Rule-basedRow Filter Rule Engine Rule Engine Rule Engine Rule Engine Row Splitter Row Splitter Concatenate Math Formula Rule Engine extract-fluids-from-d300-xml Table Rowto Variable Compute background

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: helfrich
Created at: 2020-05-26
On NodePit since: 2024-11-19
Last update: 2024-12-21
Created with KNIME version: v4.1.3

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!