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GGP2107_​DevTox

GGP2107 Predictive Toxicity (US EPA)

Predict mutagenicity, carcinogenecity, developmental toxicity, skin sensitization, fish acute toxicity, ALogP, Fathead Minnow, Daphnia Magna, BCF Model, Ready Biodegradability.

Input:
You could load 1 SDF file or multiple SDF files.
And choose which field or property to be considered.
2D SDF or if you want to merge multiple SDF files to 1 SDF you could use this node as a reader.

Models:
Users have the option to choose different models apart from the models mentioned under the nodes. 'Configure' one of the VEGA node and user could change the model to be predicted.

Output:
Save as CSV file - assign the output file/folder in 'CSV Writer' node and Interactive Table Viewer

Options:
You could consider MOL2, MOL or other chemical formats and update the I/O node accordingly.
www.nyroindia.org

WorkflowID: NRF18002Name : VEGAQSARModelsCreated by: Girinath PillaiCreated on: Jul 23, 18KNIME ver: 3.5.3Citation: KNIME Workflows, ID NRF18002,www.nyroindia.org, Kerala, India.Nodes : RDKit, VEGA, KNIME ChemistryDescription:Predict mutagenicity, carcinogenecity, developmentaltoxicity, skin sensitization, fish acute toxicity, ALogP,Fathead Minnow, Daphnia Magna, BCF Model,Ready Biodegradability.Input:You could load 1 SDF file or multiple SDF files.And choose which field or property to be considered.2D SDF or if you want to merge multiple SDF files to1 SDF you could use this node as a reader.Models:Users have the option to choose different modelsapart from the models mentioned under the nodes.'Configure' one of the VEGA node and user couldchange the model to be predicted.Output:Save as CSV file - assign the output file/folder in'CSV Writer' node and Interactive Table ViewerOptions:You could consider MOL2, MOL or other chemicalformats and update the I/O node accordingly.www.nyroindia.org Mutagenecity AMESSDF>SMINode 34CarcinogenicityDevelopmental ToxicitySkin SensitizationALogPFish Acute ToxicityMuta + CarciDev. Tox. + SkinALogP + Acute Tox.Muta + CarciDev. Tox. + SkinMuta + CarciDev. Tox. + SkinALogP + Acute Tox.SDF FilesNode 50MOL2 Files VEGA 1.1.1 Models Canonical SMILES InteractiveTable (local) VEGA 1.1.1 Models VEGA 1.1.1 Models VEGA 1.1.1 Models VEGA 1.1.1 Models VEGA 1.1.1 Models Joiner Joiner Joiner Joiner Joiner SDF Reader CSV Writer(deprecated) Mol2 Reader WorkflowID: NRF18002Name : VEGAQSARModelsCreated by: Girinath PillaiCreated on: Jul 23, 18KNIME ver: 3.5.3Citation: KNIME Workflows, ID NRF18002,www.nyroindia.org, Kerala, India.Nodes : RDKit, VEGA, KNIME ChemistryDescription:Predict mutagenicity, carcinogenecity, developmentaltoxicity, skin sensitization, fish acute toxicity, ALogP,Fathead Minnow, Daphnia Magna, BCF Model,Ready Biodegradability.Input:You could load 1 SDF file or multiple SDF files.And choose which field or property to be considered.2D SDF or if you want to merge multiple SDF files to1 SDF you could use this node as a reader.Models:Users have the option to choose different modelsapart from the models mentioned under the nodes.'Configure' one of the VEGA node and user couldchange the model to be predicted.Output:Save as CSV file - assign the output file/folder in'CSV Writer' node and Interactive Table ViewerOptions:You could consider MOL2, MOL or other chemicalformats and update the I/O node accordingly.www.nyroindia.org Mutagenecity AMESSDF>SMINode 34CarcinogenicityDevelopmental ToxicitySkin SensitizationALogPFish Acute ToxicityMuta + CarciDev. Tox. + SkinALogP + Acute Tox.Muta + CarciDev. Tox. + SkinMuta + CarciDev. Tox. + SkinALogP + Acute Tox.SDF FilesNode 50MOL2 Files VEGA 1.1.1 Models Canonical SMILES InteractiveTable (local) VEGA 1.1.1 Models VEGA 1.1.1 Models VEGA 1.1.1 Models VEGA 1.1.1 Models VEGA 1.1.1 Models Joiner Joiner Joiner Joiner Joiner SDF Reader CSV Writer(deprecated) Mol2 Reader

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