kn_example_r_check_version_of_package 0 ×
check version of R packages in KNIME
demonstrates how to check the versions of every R package. And specifically check for the version of the RServe package.
demonstrates how to check the versions of every R package. And specifically check for the version of the RServe package. With the help of the package sessioninfo you could extract more detailed infos about a specific package https://www.rdocumentation.org/packages/sessioninfo The subfolder /result/ would contain TXT files with information about the packages. There is a new official guide to install R with KNIME https://docs.knime.com/latest/r_installation_guide/index.html knime.out <- as.data.frame(installed.packages()) knime.out <- as.data.frame(.libPaths()) # some quick codes to install and find Rtools on Windows install.packages('installr') library("installr") install.Rtools() workpath_r <- "C:\\Users\\ my_user\\temp " setwd(workpath_r) # Set work directory # https://community.rstudio.com/t/how-to-set-a-variable-in-renviron/5029/3 usethis::edit_r_environ() # https://forum.knime.com/t/how-to-import-tables-from-docx-documents-via-r-snippet/19284/10?u=mlauber71 devtools::find_rtools() # check if you can access the make statement of RTools Sys.which("make") # basic session infos and specific infos about a file v_path_file_1 <- paste0(knime.flow.in[["v_result_path"]], "sessionInfo_1.txt") writeLines(capture.output(sessionInfo()), v_path_file_1) library("sessioninfo") v_path_file_2 <- paste0(knime.flow.in[["v_result_path"]], "sessionInfo_2.txt") writeLines(capture.output(session_info()), v_path_file_2) v_package_to_check <- knime.flow.in[["v_search_package"]] v_path_file_3 <- paste0(knime.flow.in[["v_result_path"]], "sessionInfo_", v_package_to_check, ".txt") writeLines(capture.output(session_info(v_package_to_check)), v_path_file_3) knime.out <- as.data.frame(v_path_file_3) # to automatically update your R on windows start this script in your plain R GUI # https://www.r-statistics.com/2013/03/updating-r-from-r-on-windows-using-the-installr-package/ if(!require(installr)) { install.packages("installr"); require(installr)} #load / install+load installr # using the package: updateR() if (!require("pacman")) install.packages("pacman") pacman::p_load(Amelia, BBmisc, BH, Cairo, Cubist, DBI, DT, Deriv, DescTools, DiagrammeR, Exact, Formula, GGally, IDPmisc, IDmining, KernSmooth, MASS, Matrix, MatrixModels, ModelMetrics, PRROC, ParamHelpers, R.methodsS3, R.oo, R.utils, R6, RColorBrewer, RCurl, RH2, RJDBC, ROCR, ROSE, RPushbullet, RSQLite, RSclient, Rcpp, RcppArmadillo, RcppEigen, RcppParallel, Rserve, Rtsne, SQUAREM, SparseM, StanHeaders, TH.data, TSP, TTR, V8, XLConnect, XML, abind, antiword, ape, aplpack, arrow, arsenal, askpass, assertthat, backports, base, base64enc, bit, bit64, bitops, blob, boot, brew, brio, broom, bslib, caTools, cachem, callr, car, carData, caret, cellranger, checkmate, chron, class, cli, clipr, cluster, codetools, colorspace, colourpicker, commonmark, compiler, conquer, corrgram, cpp11, crayon, credentials, crosstalk, curl, data.table, data.tree, datasets, dbplyr, desc, devtools, diffobj, digest, doParallel, docxtractr, downloader, dplyr, drc, dtplyr, dygraphs, e1071, ellipse, ellipsis, evaluate, expm, extraDistr, fBasics, fansi, farver, fastmap, fastmatch, fontawesome, forcats, foreach, foreign, fs, future, future.apply, gains, gargle, gbm, generics, gert, ggExtra, ggplot2, gh, gitcreds, gld, globals, glue, googledrive, googlesheets4, gower, gplots, grDevices, graphics, grid, gridExtra, gss, gtable, gtools, h2o, hardhat, haven, hexbin, highr, hms, htmltools, htmlwidgets, httpuv, httr, ids, igraph, influenceR, ini, inline, installr, ipred, isoband, iterators, janitor, jquerylib, jsonlite, knitr, labeling, lars, later, lattice, lava, lazyeval, lifecycle, lift, listenv, lme4, lmom, loo, lubridate, magrittr, maptools, markdown, matrixStats, memoise, methods, mgcv, mime, miniUI, minpack.lm, minqa, mlr, mnormt, modelr, multcomp, munsell, mvtnorm, ndjson, neuralnet, nlme, nloptr, nnet, numDeriv, odbc, openssl, openxlsx, pROC, pacman, parallel, parallelMap, parallelly, pastecs, pbkrtest, pdftools, pillar, pkgbuild, pkgconfig, pkgload, plogr, plotrix, plyr, pmml, praise, prettyunits, processx, prodlim, progress, progressr, promises, prophet, proxy, ps, psych, purrr, qpdf, quantreg, rJava, randomForest, randomForestSRC, rappdirs, rcmdcheck, readODS, readr, readtext, readxl, recipes, rematch, rematch2, remotes, reprex, reshape, reshape2, rio, rjson, rlang, rmarkdown, rootSolve, roxygen2, rpart, rprojroot, rstan, rstantools, rstudioapi, rversions, rvest, sandwich, sass, scales, selectr, sessioninfo, shiny, shinyjs, snakecase, sourcetools, sp, spatial, splines, stabledist, stats, stats4, streamR, stringi, stringr, striprtf, survival, sys, tcltk, testthat, tibble, tidyr, tidyselect, tidyverse, timeDate, timeSeries, tinytex, tmvnsim, tools, tsne, tzdb, usethis, utf8, utils, uuid, vctrs, viridis, viridisLite, visNetwork, vroom, vtreat, waldo, whisker, withr, wrapr, xfun, xgboost, xlsx, xlsxjars, xml2, xopen, xtable, xts, yaml, zip, zoo) knime.out <- as.data.frame(installed.packages()) RServe version needs to be >=1.8.6 knime.out <- as.data.frame(.libPaths()) knime.out <- as.data.frame(v_path_file_3) v_result_path install_r_packages determine path and name of workflow r_packages.xlsx install_r_packages_pacman install_r_packages_pacman install_r_packages_pacman install_r_packages_pacman.R v_search_package R Source (Table) Rule-based Row Filter R Source (Table) R Source (Table) Java Edit Variable (simple) String Manipulation Extract Context Properties Excel Writer GroupBy String Manipulation Column Filter Table Creator CSV Writer Concatenate String Widget demonstrates how to check the versions of every R package. And specifically check for the version of the RServe package. With the help of the package sessioninfo you could extract more detailed infos about a specific package https://www.rdocumentation.org/packages/sessioninfo The subfolder /result/ would contain TXT files with information about the packages. There is a new official guide to install R with KNIME https://docs.knime.com/latest/r_installation_guide/index.html knime.out <- as.data.frame(installed.packages()) knime.out <- as.data.frame(.libPaths()) # some quick codes to install and find Rtools on Windows install.packages('installr') library("installr") install.Rtools() workpath_r <- "C:\\Users\\ my_user\\temp " setwd(workpath_r) # Set work directory # https://community.rstudio.com/t/how-to-set-a-variable-in-renviron/5029/3 usethis::edit_r_environ() # https://forum.knime.com/t/how-to-import-tables-from-docx-documents-via-r-snippet/19284/10?u=mlauber71 devtools::find_rtools() # check if you can access the make statement of RTools Sys.which("make") # basic session infos and specific infos about a file v_path_file_1 <- paste0(knime.flow.in[["v_result_path"]], "sessionInfo_1.txt") writeLines(capture.output(sessionInfo()), v_path_file_1) library("sessioninfo") v_path_file_2 <- paste0(knime.flow.in[["v_result_path"]], "sessionInfo_2.txt") writeLines(capture.output(session_info()), v_path_file_2) v_package_to_check <- knime.flow.in[["v_search_package"]] v_path_file_3 <- paste0(knime.flow.in[["v_result_path"]], "sessionInfo_", v_package_to_check, ".txt") writeLines(capture.output(session_info(v_package_to_check)), v_path_file_3) knime.out <- as.data.frame(v_path_file_3) # to automatically update your R on windows start this script in your plain R GUI # https://www.r-statistics.com/2013/03/updating-r-from-r-on-windows-using-the-installr-package/ if(!require(installr)) { install.packages("installr"); require(installr)} #load / install+load installr # using the package: updateR() if (!require("pacman")) install.packages("pacman") pacman::p_load(Amelia, BBmisc, BH, Cairo, Cubist, DBI, DT, Deriv, DescTools, DiagrammeR, Exact, Formula, GGally, IDPmisc, IDmining, KernSmooth, MASS, Matrix, MatrixModels, ModelMetrics, PRROC, ParamHelpers, R.methodsS3, R.oo, R.utils, R6, RColorBrewer, RCurl, RH2, RJDBC, ROCR, ROSE, RPushbullet, RSQLite, RSclient, Rcpp, RcppArmadillo, RcppEigen, RcppParallel, Rserve, Rtsne, SQUAREM, SparseM, StanHeaders, TH.data, TSP, TTR, V8, XLConnect, XML, abind, antiword, ape, aplpack, arrow, arsenal, askpass, assertthat, backports, base, base64enc, bit, bit64, bitops, blob, boot, brew, brio, broom, bslib, caTools, cachem, callr, car, carData, caret, cellranger, checkmate, chron, class, cli, clipr, cluster, codetools, colorspace, colourpicker, commonmark, compiler, conquer, corrgram, cpp11, crayon, credentials, crosstalk, curl, data.table, data.tree, datasets, dbplyr, desc, devtools, diffobj, digest, doParallel, docxtractr, downloader, dplyr, drc, dtplyr, dygraphs, e1071, ellipse, ellipsis, evaluate, expm, extraDistr, fBasics, fansi, farver, fastmap, fastmatch, fontawesome, forcats, foreach, foreign, fs, future, future.apply, gains, gargle, gbm, generics, gert, ggExtra, ggplot2, gh, gitcreds, gld, globals, glue, googledrive, googlesheets4, gower, gplots, grDevices, graphics, grid, gridExtra, gss, gtable, gtools, h2o, hardhat, haven, hexbin, highr, hms, htmltools, htmlwidgets, httpuv, httr, ids, igraph, influenceR, ini, inline, installr, ipred, isoband, iterators, janitor, jquerylib, jsonlite, knitr, labeling, lars, later, lattice, lava, lazyeval, lifecycle, lift, listenv, lme4, lmom, loo, lubridate, magrittr, maptools, markdown, matrixStats, memoise, methods, mgcv, mime, miniUI, minpack.lm, minqa, mlr, mnormt, modelr, multcomp, munsell, mvtnorm, ndjson, neuralnet, nlme, nloptr, nnet, numDeriv, odbc, openssl, openxlsx, pROC, pacman, parallel, parallelMap, parallelly, pastecs, pbkrtest, pdftools, pillar, pkgbuild, pkgconfig, pkgload, plogr, plotrix, plyr, pmml, praise, prettyunits, processx, prodlim, progress, progressr, promises, prophet, proxy, ps, psych, purrr, qpdf, quantreg, rJava, randomForest, randomForestSRC, rappdirs, rcmdcheck, readODS, readr, readtext, readxl, recipes, rematch, rematch2, remotes, reprex, reshape, reshape2, rio, rjson, rlang, rmarkdown, rootSolve, roxygen2, rpart, rprojroot, rstan, rstantools, rstudioapi, rversions, rvest, sandwich, sass, scales, selectr, sessioninfo, shiny, shinyjs, snakecase, sourcetools, sp, spatial, splines, stabledist, stats, stats4, streamR, stringi, stringr, striprtf, survival, sys, tcltk, testthat, tibble, tidyr, tidyselect, tidyverse, timeDate, timeSeries, tinytex, tmvnsim, tools, tsne, tzdb, usethis, utf8, utils, uuid, vctrs, viridis, viridisLite, visNetwork, vroom, vtreat, waldo, whisker, withr, wrapr, xfun, xgboost, xlsx, xlsxjars, xml2, xopen, xtable, xts, yaml, zip, zoo) knime.out <- as.data.frame(installed.packages()) RServe version needs to be >=1.8.6 knime.out <- as.data.frame(.libPaths()) knime.out <- as.data.frame(v_path_file_3) v_result_path install_r_packages determine path and name of workflow r_packages.xlsx install_r_packages_pacman install_r_packages_pacman install_r_packages_pacman install_r_packages_pacman.R v_search_package R Source (Table) Rule-based Row Filter R Source (Table) R Source (Table) Java Edit Variable (simple) String Manipulation Extract Context Properties Excel Writer GroupBy String Manipulation Column Filter Table Creator CSV Writer Concatenate String Widget
